| Latinsko ime | Št. izolatov |
| _neznano | 8 |
| Acephala Grünig & T.N. Sieber (2005) | 1 |
| Acremonium Link (1809) | 2 |
| Aequabiliella effusa (Damm & Crous) Crous (2015) | 1 |
| Aequabiliella Crous (2015) | 1 |
| Albonectria rigidiuscula (Berk. & Broome) Rossman & Samuels (1999) | 1 |
| Alternaria alternata (Fr.) Keissl. (1912) | 7 |
| Alternaria Nees (1816) | 1 |
| Ambrosiella grosmanniae C. Mayers, McNew & T.C. Harr. (2015) | 1 |
| Ambrosiella hartigii L.R. Batra (1968) | 1 |
| Ampelomyces Ces. ex Schltdl. (1852) | 1 |
| Apiognomonia errabunda (Roberge ex Desm.) Höhn. (1918) | 3 |
| Apiognomonia veneta (Sacc. & Speg.) Höhn. (1920) | 1 |
| Armillaria mellea (Vahl) P. Kumm. (1871) | 1 |
| Asterosporium asterospermum (Pers.) S. Hughes (1958) | 1 |
| Atropellis piniphila (Weir) M.L. Lohman & E.K. Cash (1940) | 1 |
| Aureobasidium pullulans (de Bary) G. Arnaud (1918) | 1 |
| Beauveria Vuill. (1912) | 1 |
| Biscogniauxia granmoi Lar.N. Vassiljeva (1998) | 1 |
| Biscogniauxia nummularia (Bull.) Kuntze (1891) | 9 |
| Bjerkandera adusta (Willd.) P. Karst. (1880) | 1 |
| Bloxamia Berk. & Broome (1854) | 1 |
| Botryosphaeria dothidea (Moug.) Ces. & De Not. (1863) | 95 |
| Botryosphaeria stevensii Shoemaker (1964) | 1 |
| Botrytis P. Micheli ex Pers. (1794) | 2 |
| Bretziella fagacearum (Bretz) Z.W. de Beer, Marinc., T.A. Duong & M.J. Wingf. (2017) | 4 |
| Cadophora luteo-olivacea (J.F.H. Beyma) T.C. Harr. & McNew (2003) | 1 |
| Cadophora spadicis Travadon, D.P. Lawr., Roon.-Lath., Gubler, W.F. Wilcox, Rolshausen & K. Baumgartner (2015) | 1 |
| Cadophora Lagerb. & Melin (1927) | 1 |
| Capronia Sacc. (1883) | 1 |
| Ceratocystiopsis minuta (Siemaszko) H.P. Upadhyay & W.B. Kendr. (1975) | 1 |
| Ceratocystiopsis H.P. Upadhyay & W.B. Kendr. (1975) | 1 |
| Ceratocystis platani (J.M. Walter) Engelbr. & T.C. Harr. (2005) | 3 |
| Ceratocystis polonica (Siemaszko) C. Moreau (1952) | 3 |
| Chaetomium Kunze (1817) | 1 |
| Chalara fraxinea T. Kowalski (2006) | 116 |
| Clonostachys Corda (1839) | 1 |
| Clypeosphaeria Fuckel (1870) | 1 |
| Colletotrichum godetiae Neerg. (1950) | 1 |
| Colletotrichum Corda (1831) | 1 |
| Coniochaeta (Sacc.) Cooke (1887) | 1 |
| Coprinellus micaceus (Bull.) Vilgalys, Hopple & Jacq. Johnson (2001) | 1 |
| Coprinellus P. Karst. (1879) | 3 |
| Corinectria fuckeliana (C. Booth) C. González & P. Chaverri (2017) | 1 |
| Coryneum Nees (1816) | 2 |
| Cosmospora Rabenh. (1862) | 1 |
| Crumenulopsis pinicola (Rebent.) J.W. Groves (1969) | 1 |
| Cryphonectria carpinicola D. Rigling, T. Cech, Cornejo & L. Beenken (2020) | 5 |
| Cryphonectria naterciae Bragança, E. Diogo & A.J.L. Phillips (2011) | 1 |
| Cryphonectria parasitica (Murrill) M.E. Barr (1978) | 2 |
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